Submission Details

Submitter:

Classification:
Definitive
GENCC:100001
Gene:
Disease:
Charcot-Marie-Tooth disease
Mode Of Inheritance:
Autosomal recessive
Evaluated Date:
03/22/2021
Evidence/Notes:

HINT1 was first reported in relation to autosomal recessive Charcot-Marie-Tooth disease in 2012, characterized as an axonal neuropathy with neuromyotonia (Zimon et al., PMID: 22961002). Although neuromyotonia was initially defined as a core feature of the disorder, reports of probands without neuromyotonia indicated incomplete penetrance for this phenotype. At least twelve unique variants (e.g. missense, nonsense, frameshift, etc.) have been reported in humans, with the most common pathogenic variant c.110G>C (p.Arg37Pro) being a founder variant observed mainly in patients of Slavic origin (PMID: 31848916). Evidence supporting this gene-disease relationship includes case-level data, segregation data, and experimental data. Variants in this gene have been reported in at least ten probands in five publications (PMIDs: 26059562, 24105373, 25342199, 30001929, 22961002) and segregated with disease in four additional family members. These probands generally present with a primary axonal neuropathy characterized by gait impairment, progressive distal muscle weakness and atrophy, facial/foot deformities, and neuromyotonia. More evidence is available in the literature, but the maximum score for genetic evidence (12 pts.) has been reached. The mechanism for disease is biallelic loss of function, as the mutant proteins are unable to fulfill HINT1's signalling role in the central and peripheral nervous system (PMID: 33404983). This gene-disease association is supported by expression evidence, HINT1's biochemical function in the nervous system, and a series of functional studies performed on pathogenic variants in cell and animal models. Primary expression in the CNS and PNS indicates the crucial role that the protein fulfills, while loss of the sumolayse activity that HINT1 provides matches with the primary motor neuropathy phenotypes observed in probands (PMID: 31088288). Additionally, functional evaluation of all known pathogenic variants demonstrated a variety of altered functions including impaired thermal stability, disrupted dimer formation, and loss of interaction with SUMO1, CaM, and ICD Teneurin 1 (PMID: 33404983). In summary, HINT1 is definitively associated with autosomal recessive Charcot-Marie-Tooth disease. This has been repeatedly demonstrated in both the research and clinical diagnostic settings, and has been upheld over time.

PubMed IDs:
22961002 24105373 25342199 26059562 30001929 31088288 33404983
Public Report:
Assertion Criteria:
Submitter Submitted Date:
12/05/2025

The GenCC data are available free of restriction under a CC0 1.0 Universal (CC0 1.0) Public Domain Dedication. The GenCC requests that you give attribution to GenCC and the contributing sources whenever possible and appropriate. The accepted Flagship manuscript is now available from Genetics in Medicine (https://www.gimjournal.org/article/S1098-3600(22)00746-8/fulltext).

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