Submission Details

Submitter:

Classification:
Strong
GENCC:100002
Gene:
Disease:
neurodevelopmental disorder with hypotonia, facial dysmorphism, and brain abnormalities
Mode Of Inheritance:
Autosomal recessive
Evaluated Date:
10/24/2023
Evidence/Notes:

The PPP1R21 gene is located on chromosome 2p16.3 and encodes the Protein Phosphatase 1 Regulatory Subunit 21. PPP1R21 was first reported in relation to autosomal recessive neurodevelopmental disorder with hypotonia, facial dysmorphism and brain abnormalities (NEDHFBA) in 2018 Rehman et al. (PMID: 30520571). NEDHFBA is characterized by distinct facial dysmorphisms, intellectual disability, hypotonia, severe developmental delay and brain abnormalities. To date, 9 variants (including 3 nonsense, 5 frameshift and 1 splicing variants) have been reported in 9 probands in four publications and are included in this curation (PMID 29808498; 30520571; 32985083; 36692708). The mechanism of pathogenicity appears to be biallelic loss of function. Currently, there is limited experimental evidence to support the gene-disease association but other PP1 subunits have been linked to disease. In summary, there is strong evidence to support the relationship between PPP1R21 and autosomal recessive NEDHFBA. This classification is approved by the ClinGen Syndromic Disorders GCEP on the meeting date October 24, 2023 (SOP Version 9.0).

PubMed IDs:
29808498 30520571 32985083 36692708 37271428
Public Report:
Assertion Criteria:
Submitter Submitted Date:
12/05/2025

The GenCC data are available free of restriction under a CC0 1.0 Universal (CC0 1.0) Public Domain Dedication. The GenCC requests that you give attribution to GenCC and the contributing sources whenever possible and appropriate. The accepted Flagship manuscript is now available from Genetics in Medicine (https://www.gimjournal.org/article/S1098-3600(22)00746-8/fulltext).

The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. The GenCC does not independently verify the submitted information. Though the information is obtained from sources believed to be reliable, no warranty, expressed or implied, is made regarding accuracy, adequacy, completeness, reliability or usefulness of any information. This disclaimer applies to both isolated and aggregate uses of the information. The information is provided on an "as is" basis, collected through periodic submission and therefore may not represent the most up-to-date information from the submitters. If you have questions about the medical relevance of information contained on this website, please see a healthcare professional; if you have questions about specific gene-disease claims, please contact the relevant sources; and if you have questions about the representation of the data on this website, please contact gencc@thegencc.org.