Submission Details

Submitter:

Classification:
Definitive
GENCC:100001
Gene:
Disease:
POLR3A-related disorder
Mode Of Inheritance:
Autosomal recessive
Evaluated Date:
08/28/2024
Evidence/Notes:

The association of POLR3A variants with autosomal recessive tremor-ataxia with central hypomyelination (TACH), leukodystrophy with oligodontia (LO), and hypomyelination, hypodontia and hypogonadotropic hypogonadism (4H) syndrome was first described in 2011 (Bernard, et al. 2011, PMID: 21855841). Variants were then described in association with Wiedemann-Rautenstrauch syndrome (WRS) (PMID: 30414627) in 2018. Per criteria outlined by the Clingen Lumping and Splitting Working Group, we found no difference in molecular mechanism(s) or inheritance pattern; and found that the spectrum of phenotypic variability could exist between the described disease entities. Therefore, the prior disease entities have been lumped into one entity, POLR3A-Related Disorders (MONDO:0700276). Clinical characteristics include a variable age of onset with a spectrum of global developmental delay, failure to thrive, hypomyelinating leukodystrophy, neurological dysfunction, dental abnormalities, and hypogonadotropic hypogonadism. POLR3A is the largest subunit of RNA Polymerase III, which transcribes ribosomal, transfer, and nuclear RNAs (PMID: 34395528). Included in this curation are twelve unique variants found in nine subjects across four publications. Four of the twelve variants are predicted or proven null variants (canonical splice site variants or nonsense), the remainder are missense variants. Four of the variants had functional data supporting pathogenicity of the variant (PMID: 21855841, PMID: 30898877, PMID:38561452). Two variants had points upgraded due to variant recurrence across non-related affected patients. The mechanism of function is loss-of-function. Gene-disease relationship is supported by mouse models with POLR3A mutations (PMID: 38168294, PMID: 34583988). The gene-disease pair has had replication over time showing convincing evidence. More evidence in the literature is present, but the maximum score required for genetic evidence has been reached (12 points). To summarize, there is definitive evidence supporting the relationship between POLR3A and POLR3A-Related Disorders, with rigorous and reproducible evidence in clinical and research settings. This gene-disease curation based on ClinGen criteria was approved by the Leukodystrophy and Leukoencephalopathy GCEP on 8/28/2024 (SOP version 10).

PubMed IDs:
21855841 23355746 30414627 34583988 38561452
Public Report:
Assertion Criteria:
Submitter Submitted Date:
12/05/2025

The GenCC data are available free of restriction under a CC0 1.0 Universal (CC0 1.0) Public Domain Dedication. The GenCC requests that you give attribution to GenCC and the contributing sources whenever possible and appropriate. The accepted Flagship manuscript is now available from Genetics in Medicine (https://www.gimjournal.org/article/S1098-3600(22)00746-8/fulltext).

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