Submission Details

Submitter:

Classification:
Moderate
GENCC:100003
Gene:
Disease:
hyperphosphatasia with intellectual disability syndrome 1
Mode Of Inheritance:
Autosomal recessive
Evaluated Date:
06/18/2025
Evidence/Notes:

PIGV was first reported in relation to autosomal recessive hyperphosphatasia with intellectual disability syndrome 1 in 2010 (Krawitz et al., PMID: 20802478). 14 unique variants (13 missense, 1 nonsense) that have been reported in 18 probands in 8 publications (PMIDs: 20802478, 21739589, 22315194, 24129430, 27177984, 28688840, 28817240, 37863628) are included in this curation. One recurrent variant in the European population (NM_017837.4:c.1022C>A, p.Ala341Glu) has been observed in the homozygous state in 5 probands and in the compound heterozygous state in 9 probands. The mechanism of pathogenicity appears to be loss of function, although most variants reported in conjunction with this condition are missense variants without functional studies. This gene-disease relationship is also supported by a mouse knock-in model and a Chinese hamster ovary cell knockout model (PMIDs: 33402532, 22228761). In summary, there is moderate evidence to support this gene-disease relationship. While more evidence is needed to establish this relationship definitively, no convincing contradictory evidence has emerged. This classification was approved by the ClinGen Congenital Disorders of Glycosylation GCEP on the meeting date June 18, 2025 (SOP Version 11).

PubMed IDs:
20802478 21739589 22228761 22315194 24129430 27177984 28688840 28817240 33402532 37863628
Public Report:
Assertion Criteria:
Submitter Submitted Date:
12/05/2025

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