Submission Details

Submitter:

Classification:
Definitive
GENCC:100001
Gene:
Disease:
SFTPC-related interstitial lung disease
Mode Of Inheritance:
Autosomal dominant
Evaluated Date:
07/16/2024
Evidence/Notes:

SFTPC was first reported in relation to autosomal dominant SFTPC-related interstitial lung disease (MONDO:0018603) in 2001 (Nogee LM et al., 2001 PMID:11207353). SFTPC-related ILD is a genetic disorder that affects the lungs. It is caused by variants in the SFTPC gene, which encodes a protein that is important for the function of surfactant, a substance that lines the alveoli and helps to prevent them from collapsing. This disorder is characterized by a wide range of symptoms, from severe respiratory insufficiency in infants to adults with progressive pulmonary fibrosis. The typical presentation in infancy includes dyspnea, cough, wheezing, pulmonary infiltrates on chest radiographs, and gradual cyanosis, with or without failure to thrive (Clement A et al., 2010, PMID: 20727133).

More than 241 unique variants (e.g., synonymous, missense, in-frame indel, nonsense, frameshift) have been reported in humans by ClinVar. Evidence supporting this gene-disease relationship includes case-level and experimental data. Seventeen variants (14 missense, 2 splice donor, 1 synonymous) that have been reported in 29 probands across 12 publications (Nogee LM, et al., 2001, PMID:11207353; Tredano M, et al., 2004, PMID:15039969; Thomas AQ, et al., 2002, PMID:1199188; van Moorsel CH, et al., 2010, PMID:20656946; Ono S, et al., 2011, PMID:21828032; Peca D, et al., 2015, PMID:25782673; Tang X et al., 2019, PMID: 32851322; Katzen J, et al., 2019, PMID: 30721158; Kazzi B, et al., 2018, PMID: 30094155; Litao MK, et al., 2017, PMID: 27362365; Fattori A, et al., 2019, PMID: 30955586; Terpe F, et al., 2023, PMID: 37232099) are included in this curation. While the precise molecular mechanism may depend on the specific variant (PMID: 22461427), the disease mechanism is related to a gain-of-toxic function. Loss-of-function (nonsense) variants have not been clearly associated with disease. More evidence is available in the literature, but the maximum score for genetic evidence has been reached. This gene-disease relationship is also supported by biochemical functions, tissue specific expression and animal models (GTEx Consortium, 2013, PMID: 23715323; Katzen J et al., 2019, PMID: 30721158; Nureki SI et al., 2018, PMID: 29920187; Lawson WE, et al., 2011, PMID: 21670280).

In summary, there is definitive evidence to support the relationship between SFTPC-related interstitial lung disease. This has been repeatedly demonstrated in both the research and clinical diagnostic settings and has been upheld over time. This classification was approved by the ClinGen Interstitial Lung Disease GCEP on the meeting date July 16, 2024 (SOP Version 10).

PubMed IDs:
11207353 11991887 15039969 20656946 21670280 21828032 23715323 25782673 27362365 29920187 30094155 30721158 30955586 32851322 37232099
Public Report:
Assertion Criteria:
Submitter Submitted Date:
12/05/2025

The GenCC data are available free of restriction under a CC0 1.0 Universal (CC0 1.0) Public Domain Dedication. The GenCC requests that you give attribution to GenCC and the contributing sources whenever possible and appropriate. The accepted Flagship manuscript is now available from Genetics in Medicine (https://www.gimjournal.org/article/S1098-3600(22)00746-8/fulltext).

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